Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs148064937 | chr1:40330141 | C/T | 3.48E-5 | 224 | 14.27 | 9.47 | 8.4 | KM Plot |
| CESC | rs150602015 | chr16:1869748 | CAGAG/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs160648 | chr7:65543384 | C/A | 3.31E-6 | 218 | 14.48 | 13.23 | 2.27 | KM Plot |
| CESC | rs160649 | chr7:65543199 | C/T | 3.31E-6 | 218 | 14.48 | 13.23 | 2.27 | KM Plot |
| CESC | rs160651 | chr7:65538775 | G/A | 3.61E-6 | 217 | 14.7 | 13.23 | 2.27 | KM Plot |
| CESC | rs160652 | chr7:65538431 | A/G | 8.4E-7 | 218 | 14.48 | 13.12 | 4.92 | KM Plot |
| CESC | rs160653 | chr7:65536780 | A/G | 3.12E-8 | 220 | 14.1 | 13.97 | 7.57 | KM Plot |
| CESC | rs160655 | chr7:65533214 | T/C | 2.73E-6 | 220 | 14.8 | 13.23 | 2.27 | KM Plot |
| CESC | rs160657 | chr7:65546356 | C/T | 9.86E-7 | 219 | 14.18 | 13.23 | 4.92 | KM Plot |
| CESC | rs1657110 | chr16:1862652 | G/T | 4.33E-5 | 224 | 6.02 | 15.03 | 13.93 | KM Plot |
| CESC | rs1685509 | chr3:2259912 | C/G | 1.28E-9 | 224 | 12.92 | 26.27 | 2.4 | KM Plot |
| CESC | rs16877258 | chr5:6398877 | A/G | 3.18E-13 | 224 | 3.33 | 8.4 | 14.48 | KM Plot |
| CESC | rs16879281 | chr6:88126423 | G/C | 1.62E-7 | 223 | 14.7 | 13.23 | 5.53 | KM Plot |
| CESC | rs17295554 | chr3:185934593 | C/T | 3.24E-5 | 224 | 13 | 24.97 | 15.7 | KM Plot |
| CESC | rs1811069 | chr22:21982054 | T/G | 9.75E-5 | 223 | 15.7 | 12.83 | 8.4 | KM Plot |